Imports
ape, anndata, AnnotationHub, batchelor, BiocParallel, celldex,
colourpicker, colorspace, cowplot, cluster, ComplexHeatmap,
data.table, DelayedMatrixStats, DESeq2, dplyr, DT,
ExperimentHub, ensembldb, fields, ggplot2, ggplotify, ggrepel,
ggtree, gridExtra, grid, GSVA (>= 1.50.0), GSVAdata, igraph,
KernSmooth, limma, MAST, Matrix (>= 1.6-1), matrixStats,
methods, msigdbr, multtest, plotly, plyr, ROCR, Rtsne,
S4Vectors, scater, scMerge (>= 1.2.0), scran, Seurat (>=
3.1.3), shiny, shinyjs, SingleR, stringr, SoupX, sva, reshape2,
shinyalert, circlize, enrichR (>= 3.2), celda, shinycssloaders,
DropletUtils, scds (>= 1.2.0), reticulate (>= 1.14), tools,
tximport, tidyr, eds, withr, GSEABase, R.utils, zinbwave,
scRNAseq (>= 2.0.2), TENxPBMCData, yaml, rmarkdown, magrittr,
scDblFinder, metap, VAM (>= 0.5.3), tibble, rlang, TSCAN,
TrajectoryUtils, scuttle, utils, stats, zellkonverter,
lifecycle
Suggests
testthat, Rsubread, BiocStyle, knitr, lintr, spelling,
org.Mm.eg.db, kableExtra, shinythemes, shinyBS, shinyjqui,
shinyWidgets, shinyFiles, BiocGenerics, RColorBrewer, fastmap
(>= 1.1.0), harmony, SeuratObject, optparse