Imports
minfi, bumphunter, isotree, robustbase, ggplot2,
GenomicRanges, GenomicFeatures, IRanges, SummarizedExperiment,
stats, matrixStats, BiocGenerics, S4Vectors, utils, biomaRt,
BiocParallel, GenomeInfoDb, Homo.sapiens, purrr, tibble, Gviz,
TxDb.Hsapiens.UCSC.hg19.knownGene,
TxDb.Hsapiens.UCSC.hg18.knownGene,
TxDb.Hsapiens.UCSC.hg38.knownGene, rtracklayer, AnnotationDbi,
AnnotationHub, ExperimentHub, reshape2, grid, ensembldb,
gridExtra, IlluminaHumanMethylation450kmanifest,
IlluminaHumanMethylationEPICmanifest,
IlluminaHumanMethylation450kanno.ilmn12.hg19,
IlluminaHumanMethylationEPICanno.ilm10b2.hg19, ggrepel
Suggests
testthat, knitr, rmarkdown, BiocStyle, a4Base, kableExtra,
methods, grDevices