bio3d

R 패키지 메타데이터와 수집 신호를 모아 봅니다.

Packages / CRAN / bio3d

bio3d

v2.4-5

bio3d

Repository CRANLicense GPL (>= 2)Lifecycle activeNeeds compilation yes

Package page Reference Source DOI README NEWS

DOI

10.32614/CRAN.package.bio3d

Task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Reverse imports

285

Reverse depends

Core Signals

첫 화면에서 판단해야 할 수집 신호를 먼저 배치합니다.

Task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Reverse imports

285

Reverse depends

Supported Backends

DESCRIPTION에서 감지한 backend 관련 package입니다.

backend package 신호가 없습니다.

Quick Facts

기본 메타데이터를 작은 카드와 토큰으로 압축합니다.

profile

Repository

CRAN

Version

2.4-5

License

GPL (>= 2)

Lifecycle

active

Needs compilation

yes

Reverse depends

Reverse imports

285

Last observed

2026-05-30

CRAN: cran.r-project.org/package=bio3d

Build fields

LinkingTo

Rcpp

수집 소스별 패키지 정보

1개 소스

CRAN

2.4-5

2026-05-30

License

GPL (>= 2)

Depends

R (>= 3.1.0)

Imports

Rcpp, parallel, grid, graphics, grDevices, stats, utils

Suggests

XML, RCurl, lattice, ncdf4, igraph, bigmemory, knitr, rmarkdown, testthat (>= 0.9.1), httr, msa, Biostrings

LinkingTo

Rcpp

Needs compilation

yes

Reverse depends

Reverse imports

285

Lifecycle

active

Last observed

2026-05-30 10:45:11

이 패키지가 의존하는 패키지

5개 표시전체 20개

Package	Type	Spec
graphics CRAN · 2.4-5 · 2026-05-30	Imports	graphics
grDevices CRAN · 2.4-5 · 2026-05-30	Imports	grDevices
grid CRAN · 2.4-5 · 2026-05-30	Imports	grid
parallel CRAN · 2.4-5 · 2026-05-30	Imports	parallel
Rcpp CRAN · 2.4-5 · 2026-05-30	Imports	Rcpp
stats CRAN · 2.4-5 · 2026-05-30	Imports	stats
utils CRAN · 2.4-5 · 2026-05-30	Imports	utils
Rcpp CRAN · 2.4-5 · 2026-05-30	LinkingTo	Rcpp
bigmemory CRAN · 2.4-5 · 2026-05-30	Suggests	bigmemory
Biostrings CRAN · 2.4-5 · 2026-05-30	Suggests	Biostrings
httr CRAN · 2.4-5 · 2026-05-30	Suggests	httr
igraph CRAN · 2.4-5 · 2026-05-30	Suggests	igraph
knitr CRAN · 2.4-5 · 2026-05-30	Suggests	knitr
lattice CRAN · 2.4-5 · 2026-05-30	Suggests	lattice
msa CRAN · 2.4-5 · 2026-05-30	Suggests	msa
ncdf4 CRAN · 2.4-5 · 2026-05-30	Suggests	ncdf4
RCurl CRAN · 2.4-5 · 2026-05-30	Suggests	RCurl
rmarkdown CRAN · 2.4-5 · 2026-05-30	Suggests	rmarkdown
testthat CRAN · 2.4-5 · 2026-05-30	Suggests	testthat (>= 0.9.1)
XML CRAN · 2.4-5 · 2026-05-30	Suggests	XML
검색 결과가 없습니다.

1 / 4

이 패키지를 쓰는 패키지

5개 표시전체 10개

Package	Type	Spec
Bios2cor 2.2.2 CRAN · 2026-05-30	Depends	bio3d
aLFQ 1.3.6 CRAN · 2026-05-14	Imports	bio3d
compas 0.1.1 CRAN · 2026-05-30	Imports	bio3d
EnvNJ 0.1.3 CRAN · 2026-05-30	Imports	bio3d
orthGS 0.1.8 CRAN · 2026-05-30	Imports	bio3d
ptm 1.0.1 CRAN · 2026-05-30	Imports	bio3d (>= 2.3-4)
r3dmol 0.1.2 CRAN · 2026-05-30	Imports	bio3d
rPDBapi 3.0.1 CRAN · 2026-05-30	Imports	bio3d
SOMMD 0.1.2 CRAN · 2026-05-30	Imports	bio3d
AntibodyForests 1.1.0 CRAN · 2026-05-30	Suggests	bio3d
검색 결과가 없습니다.

1 / 2

Reverse dependency summary

3 types

Type	Packages
Depends	1
Imports	8
Suggests	1

패키지 페이지

Reverse depends

Reverse imports

Reverse suggests

All links

Repository: CRAN
Version: 2.4-5
Collected: 2026-05-21 07:06:20
Package page: https://cran.r-project.org/web/packages/bio3d/index.html
DOI: 10.32614/CRAN.package.bio3d
Citation: https://cran.r-project.org/web/packages/bio3d/citation.html
CRAN checks: https://cran.r-project.org/web/checks/check_results_bio3d.html
README: https://cran.r-project.org/web/packages/bio3d/readme/README.html
NEWS: https://cran.r-project.org/web/packages/bio3d/news/news.html
Reference HTML: https://cran.r-project.org/web/packages/bio3d/refman/bio3d.html
Reference PDF: https://cran.r-project.org/web/packages/bio3d/bio3d.pdf
Source package: https://cran.r-project.org/src/contrib/bio3d_2.4-5.tar.gz
Archive: https://CRAN.R-project.org/src/contrib/Archive/bio3d

In views

Omics

Page fields

Author: Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut]
CRAN Checks: bio3d results
Citation: bio3d citation info
DOI: 10.32614/CRAN.package.bio3d
In Views: Omics
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
LinkingTo: Rcpp
Maintainer: Barry Grant <bjgrant at ucsd.edu>
Materials: README , NEWS
NeedsCompilation: yes
Old Sources: bio3d archive
Package Source: bio3d_2.4-5.tar.gz
Published: 2024-10-29
Reference Manual: bio3d.html , bio3d.pdf
Reverse Depends: Bios2cor
Reverse Imports: compas , EnvNJ , orthGS , ptm , r3dmol , rPDBapi , SOMMD
Reverse Suggests: AlphaMissenseR , AntibodyForests , factR , ProteinGymR
URL: http://thegrantlab.org/bio3d/ , https://bitbucket.org/Grantlab/bio3d/
Version: 2.4-5
Vignettes: bio3d Vignettes ( source )
Windows Binaries: r-devel: bio3d_2.4-5.zip , r-release: bio3d_2.4-5.zip , r-oldrel: bio3d_2.4-5.zip
MacOS Binaries: r-release (arm64): bio3d_2.4-5.tgz , r-oldrel (arm64): bio3d_2.4-5.tgz , r-release (x86_64): bio3d_2.4-5.tgz , r-oldrel (x86_64): bio3d_2.4-5.tgz

Version

2.4-5

LinkingTo

Rcpp

Published

2024-10-29

DOI

10.32614/CRAN.package.bio3d

Author

Barry Grant [aut, cre], Xin-Qiu Yao [aut], Lars Skjaerven [aut], Julien Ide [aut]

Maintainer

Barry Grant <bjgrant at ucsd.edu>

License

GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]

GPL-2 GPL-3

URL

http://thegrantlab.org/bio3d/ , https://bitbucket.org/Grantlab/bio3d/

http://thegrantlab.org/bio3d/https://bitbucket.org/Grantlab/bio3d/

NeedsCompilation

yes

Citation

bio3d citation info

Materials

README , NEWS

README NEWS

In Views

Omics

CRAN Checks

bio3d results

Reference Manual

bio3d.html , bio3d.pdf

bio3d.html bio3d.pdf

Vignettes

bio3d Vignettes ( source )

bio3d Vignettes source

Package Source

bio3d_2.4-5.tar.gz

Windows Binaries

r-devel: bio3d_2.4-5.zip , r-release: bio3d_2.4-5.zip , r-oldrel: bio3d_2.4-5.zip

bio3d_2.4-5.zip bio3d_2.4-5.zip bio3d_2.4-5.zip

MacOS Binaries

r-release (arm64): bio3d_2.4-5.tgz , r-oldrel (arm64): bio3d_2.4-5.tgz , r-release (x86_64): bio3d_2.4-5.tgz , r-oldrel (x86_64): bio3d_2.4-5.tgz

bio3d_2.4-5.tgz bio3d_2.4-5.tgz bio3d_2.4-5.tgz bio3d_2.4-5.tgz

Old Sources

bio3d archive

Reverse Depends

Bios2cor

Reverse Imports

compas , EnvNJ , orthGS , ptm , r3dmol , rPDBapi , SOMMD

compas EnvNJ orthGS ptm r3dmol rPDBapi SOMMD

Reverse Suggests

AlphaMissenseR , AntibodyForests , factR , ProteinGymR

AlphaMissenseR AntibodyForests factR ProteinGymR

Page sections 4

Documentation

Heading

Documentation

Links

[{"label":"bio3d.html","section":"","type":"","url":"https://cran.r-project.org/web/packages/bio3d/refman/bio3d.html"},{"label":"bio3d.pdf","section":"","type":"","url":"https://cran.r-project.org/web/packages/bio3d/bio3d.pdf"},{"label":"bio3d Vignettes","section":"","type":"","url":"https://cran.r-project.org/web/packages/bio3d/vignettes/bio3d_vignettes.html"},{"label":"source","section":"","type":"","url":"https://cran.r-project.org/web/packages/bio3d/vignettes/bio3d_vignettes.Rmd"}]

Text

Reference manual: bio3d.html , bio3d.pdf Vignettes: bio3d Vignettes ( source )

Downloads

Heading

Downloads

Links

[{"label":"bio3d_2.4-5.tar.gz","section":"","type":"","url":"https://cran.r-project.org/src/contrib/bio3d_2.4-5.tar.gz"},{"label":"bio3d_2.4-5.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.7/bio3d_2.4-5.zip"},{"label":"bio3d_2.4-5.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.6/bio3d_2.4-5.zip"},{"label":"bio3d_2.4-5.zip","section":"","type":"","url":"https://cran.r-project.org/bin/windows/contrib/4.5/bio3d_2.4-5.zip"},{"label":"bio3d_2.4-5.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/sonoma-arm64/contrib/4.6/bio3d_2.4-5.tgz"},{"label":"bio3d_2.4-5.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-arm64/contrib/4.5/bio3d_2.4-5.tgz"},{"label":"bio3d_2.4-5.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.6/bio3d_2.4-5.tgz"},{"label":"bio3d_2.4-5.tgz","section":"","type":"","url":"https://cran.r-project.org/bin/macosx/big-sur-x86_64/contrib/4.5/bio3d_2.4-5.tgz"},{"label":"bio3d archive","section":"","type":"","url":"https://CRAN.R-project.org/src/contrib/Archive/bio3d"}]

Text

Package source: bio3d_2.4-5.tar.gz Windows binaries: r-devel: bio3d_2.4-5.zip , r-release: bio3d_2.4-5.zip , r-oldrel: bio3d_2.4-5.zip macOS binaries: r-release (arm64): bio3d_2.4-5.tgz , r-oldrel (arm64): bio3d_2.4-5.tgz , r-release (x86_64): bio3d_2.4-5.tgz , r-oldrel (x86_64): bio3d_2.4-5.tgz Old sources: bio3d archive

Reverse dependencies

Heading

Reverse dependencies

Links

[{"label":"Bios2cor","section":"","type":"","url":"https://cran.r-project.org/web/packages/Bios2cor/index.html"},{"label":"compas","section":"","type":"","url":"https://cran.r-project.org/web/packages/compas/index.html"},{"label":"EnvNJ","section":"","type":"","url":"https://cran.r-project.org/web/packages/EnvNJ/index.html"},{"label":"orthGS","section":"","type":"","url":"https://cran.r-project.org/web/packages/orthGS/index.html"},{"label":"ptm","section":"","type":"","url":"https://cran.r-project.org/web/packages/ptm/index.html"},{"label":"r3dmol","section":"","type":"","url":"https://cran.r-project.org/web/packages/r3dmol/index.html"},{"label":"rPDBapi","section":"","type":"","url":"https://cran.r-project.org/web/packages/rPDBapi/index.html"},{"label":"SOMMD","section":"","type":"","url":"https://cran.r-project.org/web/packages/SOMMD/index.html"},{"label":"AlphaMissenseR","section":"","type":"","url":"https://www.bioconductor.org/packages/release/bioc/html/AlphaMissenseR.html"},{"label":"AntibodyForests","section":"","type":"","url":"https://cran.r-project.org/web/packages/AntibodyForests/index.html"},{"label":"factR","section":"","type":"","url":"https://www.bioconductor.org/packages/release/bioc/html/factR.html"},{"label":"ProteinGymR","section":"","type":"","url":"https://www.bioconductor.org/packages/release/data/experiment/html/ProteinGymR.html"}]

Text

Reverse depends: Bios2cor Reverse imports: compas , EnvNJ , orthGS , ptm , r3dmol , rPDBapi , SOMMD Reverse suggests: AlphaMissenseR , AntibodyForests , factR , ProteinGymR

Linking

Heading

Linking

Links

[{"label":"https://CRAN.R-project.org/package=bio3d","section":"","type":"","url":"https://CRAN.R-project.org/package=bio3d"}]

Text

Please use the canonical form https://CRAN.R-project.org/package=bio3d to link to this page.

Materials 2

README NEWS

Documentation 4

bio3d.html bio3d.pdf bio3d Vignettes source

Vignettes 2