Depends
R (>= 3.5.0), methods, BiocGenerics (>= 0.25.1),
VariantAnnotation (>= 1.13.29)
Imports
utils, stats, Biobase, S4Vectors (>= 0.9.25), IRanges (>=
2.3.23), RBGL, graph, AnnotationDbi, BiocParallel, Seqinfo (>=
0.99.2), GenomeInfoDb (>= 1.45.7), Biostrings (>= 2.77.2),
GenomicRanges (>= 1.61.1), SummarizedExperiment (>= 1.39.1),
GenomicFeatures (>= 1.61.4), Rsamtools (>= 2.25.1), BSgenome
(>= 1.77.1), GenomicScores (>= 2.21.4), Gviz (>= 1.53.1),
shiny, shinythemes, shinyjs, DT, shinyTree
Suggests
RUnit, BiocStyle, org.Hs.eg.db,
BSgenome.Hsapiens.1000genomes.hs37d5,
TxDb.Hsapiens.UCSC.hg19.knownGene,
SNPlocs.Hsapiens.dbSNP144.GRCh37,
MafDb.1Kgenomes.phase1.hs37d5, phastCons100way.UCSC.hg19,
PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP137